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The nature of light and its interaction with matter

This chapter provides a physical background to the following ones. It describes the particle and wave properties of light and the diffraction, polarization, refraction, reflection, and absorption of light and statistics of photon emission and absorption. Planck’s law of heat radiation is described in various mathematical and graphical ways. One section is devoted to a simplified description of the

Optimization of OSPF routing in IP networks

The Internet is a huge world-wide packet switching network comprised of more than 13,000 distinct subnetworks, referred to as Autonomous Systems (ASs) . They all rely on the Internet Protocol (IP) for transport of packets across the network. And most of them use shortest path routing protocols , such as OSPF or IS-IS, to control the routing of IP packets within an AS. The idea of the routing is ex

Systemic combinatory use of Brainstorming, Mind-Maps and Rich Pictures for analysis of complex problem spaces

For years tools and techniques such as Brainstorming, Mind-Maps and Rich Pictures have been used in both academic and professional practices to assist people with making sense of complex problem spaces. These tools have their supporters and in many cases their uses can be argued to be interchangeable. Seldom however have they been systematically applied in combination in theory or practice. Even t

CCR2(+)CD103(-) intestinal dendritic cells develop from DC-committed precursors and induce interleukin-17 production by T cells.

The identification of intestinal macrophages (mφs) and dendritic cells (DCs) is a matter of intense debate. Although CD103(+) mononuclear phagocytes (MPs) appear to be genuine DCs, the nature and origins of CD103(-) MPs remain controversial. We show here that intestinal CD103(-)CD11b(+) MPs can be separated clearly into DCs and mφs based on phenotype, gene profile, and kinetics. CD64(-)CD103(-)CD1

A microarray for large-scale genomic and transcriptional analyses of the zebra finch (Taeniopygia guttata) and other passerines

The microarray technology has revolutionized biological research in the last decade. By monitoring the expression of many genes simultaneously, microarrays can elucidate gene function, as well as scan entire genomes for candidate genes encoding complex traits. However, because of high costs of sequencing and design, microarrays have largely been restricted to a few model species. Cross-species mic

Quasi-Lie algebras

This paper introduces a new class of algebras naturally containing, within a single framework, various deformations of the Witt, Virasoro and other Lie algebras based on twisted and deformed derivations, in addition to color Lie algebras and Lie superalgebras.

Microdeletions are a general feature of adult and adolescent acute lymphoblastic leukemia: Unexpected similarities with pediatric disease

We present here a genome-wide map of abnormalities found in diagnostic samples from 45 adults and adolescents with acute lymphoblastic leukemia (ALL). A 500K SNP array analysis uncovered frequent genetic abnormalities, with cryptic deletions constituting half of the detected changes, implying that microdeletions are a characteristic feature of this malignancy. Importantly, the pattern of deletions

Quantification of Membrane Proteins Using Nonspecific Protease Digestions

We present a mass spectrometry-based method for the identification and quantification of membrane proteins using the low-specificity protease Proteinase K, at very high pH, to digest proteins isolated by a modified SDS-PAGE protocol. The resulting peptides are modified with a fragmentation-directing isotope labeled tag. We apply the method to quantify differences in membrane protein expression of

The transcription factor Sox11 is a prognostic factor for improved recurrence-free survival in epithelial ovarian cancer

Abstract Background: Current prognostic molecular markers for epithelial ovarian cancer (EOC) are insufficient. The aim of the current study was to investigate the role of Sox11 in EOC Methods: Using an in silico transcriptomic screen Sox11 was identified as a potential EOC biomarker. Sox11 protein expression was evaluated using immunohistochemistry (IHC) in 76 EOC cases, which were analyzed using

Improved fast correlation attacks on stream ciphers via convolutional codes

This paper describes new methods for fast correlation attacks, based on the theory of convolutional codes. They can be applied to arbitrary LFSR feedback polynomials, in opposite to the previous methods, which mainly focus on feedback polynomials of low weight. The results improve significantly the few previous results for this general case, and are in many cases comparable with corresponding resu

The immune diversity in a test tube - Non-immunised antibody libraries and functional variability in defined protein scaffolds

Technologies to develop and evolve the function of proteins and, in particular, antibodies have developed rapidly since the introduction of phage display. Importantly, it has become possible to identify molecules with binding properties that cannot be found by other means. A range of different approaches to create general libraries that are useful for the selection of such molecules specific for e

Studies on Factivity, Complementation, and Propositional Attitudes

This dissertation is a collection of seven papers in which a number of questions are investigated regarding verbs that take a sentential complement as their direct object. These verbs are considered from different perspectives, namely from the perspective of the propositional attitude they express, or from the perspective of the syntactic construction they select, or from the point of view of the